doi: 10.17586/2226-1494-2024-24-4-661-664


Method of muscle tissue segmentation in computed tomography images based on preprocessed three-channel images

A. R. Teplyakova, R. V. Shershnev, S. O. Starkov


Read the full article  ';
Article in Russian

For citation:
Teplyakova A.R., Shershnev R.V., Starkov S.O. Method of muscle tissue segmentation in computed tomography images based on preprocessed three-channel images. Scientific and Technical Journal of Information Technologies, Mechanics and Optics, 2024, vol. 24, no. 4, pp. 661–664 (in Russian). doi: 10.17586/2226-1494-2024-24-4-661-664


Abstract
The results of a study of a preprocessing influence method based on the formation of three-channel images on the accuracy of muscle tissue segmentation models on the computed tomography scans corresponding to the levels of the vertebrae of the thoracic and lumbar spine are presented. Ten models have been trained and tested on the Sparsely Annotated Region and Organ Segmentation dataset. The values of the Dice similarity coefficient and the Intersection over Union in the ranges of 0.9353–0.9421 and 0.8737–0.8885 were obtained. The use of a three-channel approach to the formation of input data increased the accuracy of models of four of the five architectures considered. Trained models can be used to quickly and accurately annotate muscle tissue during the diagnostic process.

Keywords: computer vision, segmentation, computed tomography, muscle tissue, diagnostics, U-Net

References
  1. Teplyakova A.R., Shershnev R.V., Starkov S.O., Agababian T.A., Kukarskaya V.A. Segmentation of muscle tissue in computed tomography images at the level of the L3 vertebra. Scientific and Technical Journal of Information Technologies, Mechanics and Optics, 2024, vol. 24, no. 1, pp. 124–132. (in Russian). https://doi.org/10.17586/2226-1494-2024-24-1-124-132
  2. Van den Broeck J., Sealy M.J., Brussaard C., Kooijman J., Jager-Wittenaar H., Scafoglieri A. The correlation of muscle quantity and quality between all vertebra levels and level L3, measured with CT: An exploratory study. Frontiers in Nutrition, 2023, vol. 10, pp. 1148809. https://doi.org/10.3389/fnut.2023.1148809
  3. Arayne A.A., Gartrell R., Qiao J., Baird P.N., Yeung J.M. Comparison of CT derived body composition at the thoracic T4 and T12 with lumbar L3 vertebral levels and their utility in patients with rectal cancer. BMC Cancer, 2023, vol. 23, no. 1, pp. 56. https://doi.org/10.1186/s12885-023-10522-0
  4. Molwitz I., Ozga A.K., Gerdes L., Ungerer A., Köhler D., Ristow I., Leiderer M., Adam G., Yamamura J. Prediction of abdominal CT body composition parameters by thoracic measurements as a new approach to detect sarcopenia in a COVID-19 cohort. Scientific Reports, 2022, vol. 12, no. 1, pp. 6443. https://doi.org/10.1038/s41598-022-10266-0
  5. Vangelov B., Bauer J., Kotevski D., Smee R.I. The use of alternate vertebral levels to L3 in computed tomography scans for skeletal muscle mass evaluation and sarcopenia assessment in patients with cancer: a systematic review. British Journal of Nutrition, 2022, vol. 127, no. 5, pp. 722–735. https://doi.org/10.1017/S0007114521001446
  6. Clark K., Vendt B., Smith K., Freymann J., Kirby J., Koppel P., Moore S., Phillips S., Maffitt D., Pringle M., Tarbox L., Prior F. The Cancer Imaging Archive (TCIA): maintaining and operating a public information repository. Journal of Digital Imaging, 2013, vol. 26, no. 6, pp. 1045–1057. https://doi.org/10.1007/s10278-013-9622-7
  7. Koitka S., Baldini G., Kroll L., van Landeghem N., Pollok O.B., Haubold J., Pelka O., Kim M., Kleesiek J., Nensa F., Hosch R. SAROS: A dataset for whole-body region and organ segmentation in CT imaging. Scientific Data, 2024, vol. 11, no. 1, pp. 483.  https://doi.org/10.1038/s41597-024-03337-6
  8. Hou B., Mathai T.S., Liu J., Parnell C., Summers R.M. Enhanced muscle and fat segmentation for CT-based body composition analysis: a comparative study. International Journal of Computer Assisted Radiology and Surgery, 2024, in press. https://doi.org/10.1007/s11548-024-03167-2 
  9. Tepliakova A.R., Shershnev R.V. Program for training muscle tissue segmentation models from computed tomography images. Certificate of state registration of a computer program RU2024612322, 31.01.2024. (in Russian)


Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License
Copyright 2001-2024 ©
Scientific and Technical Journal
of Information Technologies, Mechanics and Optics.
All rights reserved.

Яндекс.Метрика