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Editor-in-Chief
Nikiforov
Vladimir O.
D.Sc., Prof.
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doi: 10.17586/2226-1494-2019-19-1-27-32
APPLICABILITY OF PHOTOFLUORESCENT TECHNIQUES FOR RESEARCH OF PROTEIN STRUCTURE DYNAMICS IN AQUEOUS SOLUTIONS
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Article in Russian
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Abstract
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Sibirtsev V.S. Applicability of photofluorescent techniques for research of protein structure dynamics in aqueous solutions. Scientific and Technical Journal of Information Technologies, Mechanics and Optics, 2019, vol. 19, no. 1, pp. 27–32 (in Russian). doi: 10.17586/2226-1494-2019-19-1-27-32
Abstract
Subject of research. This paper presents developed techniques for research of the spatial structure changes of protein molecules when the state of these molecules is close enough to that one in living organisms, actively participating, as enzymes, in regulating the metabolism of the latter. Method. The synchronous photofluorescence spectra of aqueous solutions of casein milk protein were studied in the visible and near ultraviolet regions at different shifts of emission wavelengths relative to excitation wavelength (Dwl). Main results. Significant differences were observed both in the intensity and in the position of light scattering peaks and the own molecular photofluorescence of casein water solutions not only at different concentrations of the protein component in them, but also depending on the duration of casein presence in a dissolved state. Apparently, this fact was due to the differences in the spatial structure of protein molecules in the studied solutions (determined, in turn, by different degrees of hydrogen and Van der Waals interactions of these high-molecular compounds together with the water molecules surrounding them). Practical relevance. It was demonstrated that photoluminescence techniques provide the researcher with a fairly simple, reliable and informative way of studying both thermodynamic and kinetic aspects of the interaction of protein molecules, which are in a state close to the native, with the surrounding molecules of the other substances (including water). The synchronous spectra of the intrinsic molecular photofluorescence of aqueous protein solutions can be used for this, which are recorded at Dwl = 10 nm in the excitation wavelength range from 230 to 600 nm. Whereas similar spectra recorded at Dwl = 0 and 90 nm can be recommended for more sensitive quantitative determination of the protein content in aqueous solutions.
Keywords: protein luminescence, elastic light scattering of polypeptide solutions, protein space structure
References
References
1. Bashkatov A.N., Genina E.A., Tuchin V.V. Tissue optical properties. In Handbook of Biomedical Optic. CRC Press, 2011, pp. 67–100. doi: 10.1201/b10951-7
2. Bashkatov A.N., Genina E.A., Kozintseva M.D., Kochubei V.I., Gorodkov S.Yu., Tuchin V.V. Optical properties of peritoneal biological tissues in the spectral range of 350–2500 nm. Optics and Spectroscopy, 2016, vol. 120, no. 1, pp. 1–8. doi: 10.1134/S0030400X16010045
3. Nepomniashchaia E.K., Cheremiskina A.V., Velichko E.N., Aksenov E.T., Bogomaz T.A. Studies of albumin using a combination of laser correlation spectroscopy and dielectric spectroscopy. Journal of Optical Technology, 2016, vol. 83, no. 5, pp. 305–308. doi: 10.1364/jot.83.000305
4. Plotnikova L.V., Nechiporenko A.P., Orekhova S.M., Plotnikov P.P., Ishevski A.L. A study of muscular tissue of animal origin by reflection-spectroscopy methods. Optics and Spectroscopy, 2017, vol. 122, no. 6, pp. 1015–1018. doi: 10.1134/s0030400x17060157
5. Movasaghi Z., Rehman S., Rehman I.U. Raman spectroscopy of biological tissues. Applied Spectroscopy Reviews, 2007, vol. 42, no. 5, pp. 493–541. doi: 10.1080/05704920701551530
6. Orr L.E. Raman Spectroscopy of Biological Tissue for Application in Optical Diagnosis of Malignancy. PhD Dis. Thesis. Cranfield University, 2010, 309 p.
7. Burova T.G., Shcherbakov R.S. Quantum-mechanical analysis of the intensity distribution in spectra of resonant raman scattering spectra of aqueous solutions of tyrosine. Optics and Spectroscopy, 2016, vol. 120, no. 5, pp. 721–725. doi: 10.1134/s0030400x16050052
8. Timchenko P.E., Timchenko E.V., Dolgushkin D.A., Volova L.T., Markova M.D. Application of Raman spectroscopy to assess the condition of bone and cartilaginous biopsy specimens. Journal of Optical Technology, 2017, vol. 84, no. 6, pp. 423–425. doi: 10.1364/jot.84.000423
9. Kogan B.Ya., Butenin A.V., Galov A.P. Measurement of lifetimes of triplet states of organic molecules by fluorescence recovery kinetics. Optics and Spectroscopy, 2016, vol. 120, no. 2, pp. 280–282. doi: 10.1134/s0030400x16010100
10. Sibirtsev V.S., Garabadzhiu A.V., Ivanov S.D. Mechanisms of variation in fluorescent properties of bis-benzimidazole dyes. Russian Journal of Bioorganic Chemistry, 1995, vol. 21, no. 9, pp. 731–736. (in Russian)
11. Sibirtsev V.S., Garabadzhiu A.V., Ivanov S.D. Spectral properties of bisbenzimidazole dyes upon interaction with DNA. Russian Journal of Bioorganic Chemistry, 1997, vol. 23, no. 12, pp. 857–866.
12. Sibirtsev V.S., Garabadzhiu A.V. Effect of heteroatom on the spectral properties of benzazoles. Russian Journal of Organic Chemistry, 1997, vol. 33, no. 12, pp. 1756–1759.
13. Sibirtsev V.S., Glibin E.N., Ivanov S.D. Variation of spectral properties of actinocin derivatives due to equilibrium transformations. Russian Journal of Organic Chemistry, 2000, vol. 36, no. 12, pp. 1812–1818.
14. Sibirtsev V.S., Garabadzhiu A.V., Ivanov S.D. Comparative study of DNA-specific dyes of the indole and benzimidazole series. Russian Journal of Bioorganic Chemistry, 2001, vol. 27, no. 1, pp. 57–65.
15. Sibirtsev V.S., Tolmachev A.Yu., Suslov V.V., Garabadzhiu A.V., Traven' V.F. Dependence of fluorescence properties of compounds from psoralen, angelicin, and carbazole series on the character of their terminal substituents. Russian Journal of Organic Chemistry, 2003, vol. 39, no. 6, pp. 881–889. doi:10.1023/b:rujo.0000003169.96393.1d
16. Sibirtsev V.S. Study of applicability of the bifunctional system "ethidium bromide + Hoechst-33258" for DNA analysis. Biochemistry (Moscow), 2005, vol. 70, no. 4, pp. 449–457. doi: 10.1007/s10541-005-0136-x
17. Sibirtsev V.S., Tolmachev A.Yu., Kovaleva M.V., Garabadzhiu A.V., Traven V.F. Spectral study of interactions of 4,8,4'-trimethylpsoralen and 4,4'-dimethylangelicin dyes with DNA. Biochemistry (Moscow), 2005, vol. 70, no. 7, pp. 822–832. doi: 10.1007/s10541-005-0190-4
18. Sibirtsev V.S. Fluorescent DNA probes: study of mechanisms of changes in spectral properties and features of practical application. Biochemistry (Moscow), 2007, vol. 72, no. 8, pp. 887–900. doi: 10.1134/S0006297907080111
19. Sibirtsev V.S., Garabadzhiu A.V. Spectral study of the interaction of DNA with benzothiazolyl-benz-a-chromene. Biochemistry (Moscow), 2007, vol. 72, no. 8, pp. 901–909. doi: 10.1134/s0006297907080123
20. Papayan G., Petrishchev N., Galagudza M. Autofluorescence spectroscopy for NADH and flavoproteins redox state monitoring in the isolated rat heart subjected to ischemia-reperfusion. Photodiagnosis and Photodynamic Therapy, 2014, vol. 11, no. 3, pp. 400–408. doi: 10.1016/j.pdpdt.2014.05.003
21. Plotnikova O.A., Mel’nikov A.G., Mel’nikov G.V., Gubina T.I. Quenching of tryptophan fluorescence of bovine serum albumin under the effect of ions of heavy metals. Optics and Spectroscopy, 2016, vol. 120, no. 1, pp. 65–69. doi: 10.1134/s0030400x16010148
22. Sibirtsev V.S. Investigation of mechanisms of change in spectral properties during interaction of benzazole, indole, and phenanthridium compounds with DNA. Journal of Optical Technology, 2017, vol. 84, no. 5, pp. 294–301. doi: 10.1364/jot.84.000294
2. Bashkatov A.N., Genina E.A., Kozintseva M.D., Kochubei V.I., Gorodkov S.Yu., Tuchin V.V. Optical properties of peritoneal biological tissues in the spectral range of 350–2500 nm. Optics and Spectroscopy, 2016, vol. 120, no. 1, pp. 1–8. doi: 10.1134/S0030400X16010045
3. Nepomniashchaia E.K., Cheremiskina A.V., Velichko E.N., Aksenov E.T., Bogomaz T.A. Studies of albumin using a combination of laser correlation spectroscopy and dielectric spectroscopy. Journal of Optical Technology, 2016, vol. 83, no. 5, pp. 305–308. doi: 10.1364/jot.83.000305
4. Plotnikova L.V., Nechiporenko A.P., Orekhova S.M., Plotnikov P.P., Ishevski A.L. A study of muscular tissue of animal origin by reflection-spectroscopy methods. Optics and Spectroscopy, 2017, vol. 122, no. 6, pp. 1015–1018. doi: 10.1134/s0030400x17060157
5. Movasaghi Z., Rehman S., Rehman I.U. Raman spectroscopy of biological tissues. Applied Spectroscopy Reviews, 2007, vol. 42, no. 5, pp. 493–541. doi: 10.1080/05704920701551530
6. Orr L.E. Raman Spectroscopy of Biological Tissue for Application in Optical Diagnosis of Malignancy. PhD Dis. Thesis. Cranfield University, 2010, 309 p.
7. Burova T.G., Shcherbakov R.S. Quantum-mechanical analysis of the intensity distribution in spectra of resonant raman scattering spectra of aqueous solutions of tyrosine. Optics and Spectroscopy, 2016, vol. 120, no. 5, pp. 721–725. doi: 10.1134/s0030400x16050052
8. Timchenko P.E., Timchenko E.V., Dolgushkin D.A., Volova L.T., Markova M.D. Application of Raman spectroscopy to assess the condition of bone and cartilaginous biopsy specimens. Journal of Optical Technology, 2017, vol. 84, no. 6, pp. 423–425. doi: 10.1364/jot.84.000423
9. Kogan B.Ya., Butenin A.V., Galov A.P. Measurement of lifetimes of triplet states of organic molecules by fluorescence recovery kinetics. Optics and Spectroscopy, 2016, vol. 120, no. 2, pp. 280–282. doi: 10.1134/s0030400x16010100
10. Sibirtsev V.S., Garabadzhiu A.V., Ivanov S.D. Mechanisms of variation in fluorescent properties of bis-benzimidazole dyes. Russian Journal of Bioorganic Chemistry, 1995, vol. 21, no. 9, pp. 731–736. (in Russian)
11. Sibirtsev V.S., Garabadzhiu A.V., Ivanov S.D. Spectral properties of bisbenzimidazole dyes upon interaction with DNA. Russian Journal of Bioorganic Chemistry, 1997, vol. 23, no. 12, pp. 857–866.
12. Sibirtsev V.S., Garabadzhiu A.V. Effect of heteroatom on the spectral properties of benzazoles. Russian Journal of Organic Chemistry, 1997, vol. 33, no. 12, pp. 1756–1759.
13. Sibirtsev V.S., Glibin E.N., Ivanov S.D. Variation of spectral properties of actinocin derivatives due to equilibrium transformations. Russian Journal of Organic Chemistry, 2000, vol. 36, no. 12, pp. 1812–1818.
14. Sibirtsev V.S., Garabadzhiu A.V., Ivanov S.D. Comparative study of DNA-specific dyes of the indole and benzimidazole series. Russian Journal of Bioorganic Chemistry, 2001, vol. 27, no. 1, pp. 57–65.
15. Sibirtsev V.S., Tolmachev A.Yu., Suslov V.V., Garabadzhiu A.V., Traven' V.F. Dependence of fluorescence properties of compounds from psoralen, angelicin, and carbazole series on the character of their terminal substituents. Russian Journal of Organic Chemistry, 2003, vol. 39, no. 6, pp. 881–889. doi:10.1023/b:rujo.0000003169.96393.1d
16. Sibirtsev V.S. Study of applicability of the bifunctional system "ethidium bromide + Hoechst-33258" for DNA analysis. Biochemistry (Moscow), 2005, vol. 70, no. 4, pp. 449–457. doi: 10.1007/s10541-005-0136-x
17. Sibirtsev V.S., Tolmachev A.Yu., Kovaleva M.V., Garabadzhiu A.V., Traven V.F. Spectral study of interactions of 4,8,4'-trimethylpsoralen and 4,4'-dimethylangelicin dyes with DNA. Biochemistry (Moscow), 2005, vol. 70, no. 7, pp. 822–832. doi: 10.1007/s10541-005-0190-4
18. Sibirtsev V.S. Fluorescent DNA probes: study of mechanisms of changes in spectral properties and features of practical application. Biochemistry (Moscow), 2007, vol. 72, no. 8, pp. 887–900. doi: 10.1134/S0006297907080111
19. Sibirtsev V.S., Garabadzhiu A.V. Spectral study of the interaction of DNA with benzothiazolyl-benz-a-chromene. Biochemistry (Moscow), 2007, vol. 72, no. 8, pp. 901–909. doi: 10.1134/s0006297907080123
20. Papayan G., Petrishchev N., Galagudza M. Autofluorescence spectroscopy for NADH and flavoproteins redox state monitoring in the isolated rat heart subjected to ischemia-reperfusion. Photodiagnosis and Photodynamic Therapy, 2014, vol. 11, no. 3, pp. 400–408. doi: 10.1016/j.pdpdt.2014.05.003
21. Plotnikova O.A., Mel’nikov A.G., Mel’nikov G.V., Gubina T.I. Quenching of tryptophan fluorescence of bovine serum albumin under the effect of ions of heavy metals. Optics and Spectroscopy, 2016, vol. 120, no. 1, pp. 65–69. doi: 10.1134/s0030400x16010148
22. Sibirtsev V.S. Investigation of mechanisms of change in spectral properties during interaction of benzazole, indole, and phenanthridium compounds with DNA. Journal of Optical Technology, 2017, vol. 84, no. 5, pp. 294–301. doi: 10.1364/jot.84.000294